{"id":1622,"date":"2015-09-28T17:16:47","date_gmt":"2015-09-28T15:16:47","guid":{"rendered":"http:\/\/bioinfo2.ugr.es\/CpGislandDB\/?page_id=1622"},"modified":"2015-09-28T17:16:47","modified_gmt":"2015-09-28T15:16:47","slug":"datasets","status":"publish","type":"page","link":"https:\/\/alu.ugr.es\/bioinfo\/cpgislanddb\/datasets\/","title":{"rendered":"Genome assemblies used"},"content":{"rendered":"<p>Eight genome assemblies [human (hg38, hg19), chimp (panTro4), gorilla (gorGor3), orangutan (ponAbe2, rhesus monkey (rheMac3), mouse (mm10) and rat (rn5) ] were used to derive CpG islands by means of the <em><a href=\"http:\/\/bioinfo2.ugr.es\/GenomeCluster\/\" target=\"_blank\">GenomeCluster <\/a><\/em>program.<\/p>\n<div class=\"entry-content\">\n<p>Two sets of CpG-islands were generated by means of the <em><a href=\"http:\/\/bioinfo2.ugr.es\/GenomeCluster\/\" target=\"_blank\">GenomeCluster<\/a> <\/em>program on each genome assembly: 1) the original set with <em>p-value <\/em>\u2264 1E-5, and 2) an strict set by increasing the required statistical significance to <em>p-value <\/em>\u2264 1E-20 (i.e. filtering out the less significant islands).<\/p>\n<p>A track hub for each genome assembly was made available through the web, thus allowing 1) to display genome-wide maps of CpG-islands in the Genome Browser of the UCSC, and 2) to obtain tables with genome coordinates (in BED format) by means of Table Browser.<\/p>\n<\/div>\n","protected":false},"excerpt":{"rendered":"<p>Eight genome assemblies [human (hg38, hg19), chimp (panTro4), gorilla (gorGor3), orangutan (ponAbe2, rhesus monkey (rheMac3), mouse (mm10) and rat (rn5) ] were used to derive CpG islands by means of the GenomeCluster program. Two sets of CpG-islands were generated by means of the GenomeCluster program on each genome assembly: 1) the original set with p-value [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-1622","page","type-page","status-publish","hentry"],"_links":{"self":[{"href":"https:\/\/alu.ugr.es\/bioinfo\/cpgislanddb\/wp-json\/wp\/v2\/pages\/1622","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/alu.ugr.es\/bioinfo\/cpgislanddb\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/alu.ugr.es\/bioinfo\/cpgislanddb\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/alu.ugr.es\/bioinfo\/cpgislanddb\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/alu.ugr.es\/bioinfo\/cpgislanddb\/wp-json\/wp\/v2\/comments?post=1622"}],"version-history":[{"count":0,"href":"https:\/\/alu.ugr.es\/bioinfo\/cpgislanddb\/wp-json\/wp\/v2\/pages\/1622\/revisions"}],"wp:attachment":[{"href":"https:\/\/alu.ugr.es\/bioinfo\/cpgislanddb\/wp-json\/wp\/v2\/media?parent=1622"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}