{"id":172,"date":"2013-05-31T20:52:35","date_gmt":"2013-05-31T18:52:35","guid":{"rendered":"https:\/\/bioinfo2.ugr.es\/bioinfo\/?page_id=172"},"modified":"2013-05-31T20:52:35","modified_gmt":"2013-05-31T18:52:35","slug":"ucsc-genome-browser","status":"publish","type":"page","link":"https:\/\/alu.ugr.es\/bioinfo\/?page_id=172","title":{"rendered":"UCSC Genome Browser"},"content":{"rendered":"<h3><a href=\"http:\/\/genome.ucsc.edu\/index.html\" target=\"_blank\"><img loading=\"lazy\" decoding=\"async\" class=\"alignnone size-full wp-image-186\" alt=\"ucsc\" src=\"https:\/\/alu.ugr.es\/bioinfo\/wp-content\/uploads\/2013\/05\/ucsc.jpg\" width=\"250\" height=\"250\" srcset=\"https:\/\/alu.ugr.es\/bioinfo\/wp-content\/uploads\/2013\/05\/ucsc.jpg 250w, https:\/\/alu.ugr.es\/bioinfo\/wp-content\/uploads\/2013\/05\/ucsc-150x150.jpg 150w\" sizes=\"auto, (max-width: 250px) 100vw, 250px\" \/><\/a><\/h3>\n<h3><a href=\"http:\/\/genome.ucsc.edu\/index.html\" target=\"_blank\">UCSC Genome Browser<\/a><\/h3>\n<ul>\n<li><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgTables?hgsid=337716003\" target=\"_blank\">Table Browser<\/a><\/li>\n<li><a href=\"http:\/\/genome.ucsc.edu\/FAQ\/FAQformat#format1\" target=\"_blank\">El formato BED<\/a><\/li>\n<li><a href=\"http:\/\/genomewiki.ucsc.edu\/index.php\/Coordinate_Transforms\" target=\"_blank\">Coordenadas UCSC<\/a><\/li>\n<li>Operaciones sencillas con tablas<\/li>\n<li>Uso de filtros<\/li>\n<\/ul>\n<p><strong>Ejercicios.<\/strong> Mediante Table Browser:<\/p>\n<blockquote>\n<ol>\n<li>Obtener los SNPs del cromosoma 21 humano.<\/li>\n<li>Con la ayuda de una hoja de c\u00e1lculo, determinar la longitud media, m\u00ednima y m\u00e1xima de los transcritos de los genes RefSeq en el cromosoma 21 humano.<\/li>\n<li>Uso de filtros: Obtener los retrotransposones de la familia Alu en el cromosoma 19 humano.<\/li>\n<li>Obtener elementos repetidos eligiendo las columnas milliDiv, milliDel, milliIns, genoName, genoStart, genoEnd, repName, repFamily (Output format: selected fields from primary and related tables).<\/li>\n<\/ol>\n<p>Tarea para casa: Repetir las operaciones del punto 2 para las CDSs del cromosoma 22 humano. Enviar los resultados por correo electr\u00f3nico al Profesor.<\/p><\/blockquote>\n<h3><a href=\"http:\/\/genome.ucsc.edu\/cgi-bin\/hgBlat\" target=\"_blank\">BLAT<\/a><\/h3>\n","protected":false},"excerpt":{"rendered":"<p>UCSC Genome Browser Table Browser El formato BED Coordenadas UCSC Operaciones sencillas con tablas Uso de filtros Ejercicios. Mediante Table Browser: Obtener los SNPs del cromosoma 21 humano. Con la ayuda de una hoja de c\u00e1lculo, determinar la longitud media, m\u00ednima y m\u00e1xima de los transcritos de los genes RefSeq en el cromosoma 21 humano. [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":1995,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-172","page","type-page","status-publish","hentry"],"blocksy_meta":[],"_links":{"self":[{"href":"https:\/\/alu.ugr.es\/bioinfo\/index.php?rest_route=\/wp\/v2\/pages\/172","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/alu.ugr.es\/bioinfo\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/alu.ugr.es\/bioinfo\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/alu.ugr.es\/bioinfo\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/alu.ugr.es\/bioinfo\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=172"}],"version-history":[{"count":0,"href":"https:\/\/alu.ugr.es\/bioinfo\/index.php?rest_route=\/wp\/v2\/pages\/172\/revisions"}],"up":[{"embeddable":true,"href":"https:\/\/alu.ugr.es\/bioinfo\/index.php?rest_route=\/wp\/v2\/pages\/1995"}],"wp:attachment":[{"href":"https:\/\/alu.ugr.es\/bioinfo\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=172"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}